PH01000122G0030's details annotation
1.Annotation
ICBR annotation: stage II sporulation protein E, putative, expressed
Blast result AT4G16580 : 3.00E-112
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 13854 | 18081 |
| mRNA | 13854 | 18081 |
| exon | 13854 | 14198 |
| exon | 14891 | 15040 |
| exon | 15525 | 15849 |
| exon | 16651 | 18081 |
| CDS | 13902 | 14198 |
| CDS | 14891 | 15040 |
| CDS | 15525 | 15849 |
| CDS | 16651 | 17315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07228.11 | SpoIIE | 259 | 472 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.