PH01000122G1250's details annotation
1.Annotation
ICBR annotation: U-box domain-containing protein, putative, expressed
Blast result AT5G05230 : 1.30E-43
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 741652 | 745910 |
| mRNA | 741652 | 745910 |
| exon | 741652 | 741931 |
| exon | 742009 | 742097 |
| exon | 742161 | 742256 |
| exon | 742354 | 742436 |
| exon | 742640 | 742655 |
| exon | 743210 | 743292 |
| exon | 743976 | 744045 |
| exon | 744635 | 744714 |
| exon | 745171 | 745368 |
| exon | 745582 | 745910 |
| CDS | 741802 | 741931 |
| CDS | 742009 | 742097 |
| CDS | 742161 | 742256 |
| CDS | 742354 | 742436 |
| CDS | 742640 | 742655 |
| CDS | 743210 | 743292 |
| CDS | 743976 | 744045 |
| CDS | 744635 | 744714 |
| CDS | 745171 | 745368 |
| CDS | 745582 | 745837 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.