PH01000140G1390's details annotation
1.Annotation
ICBR annotation: SNARE domain containing protein, putative, expressed
Blast result AT3G58170 : 2.30E-47
Blast annotation: BET1P/SFT1P-like protein 14A
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 1007512 | 1012135 |
| mRNA | 1007512 | 1012135 |
| exon | 1007512 | 1007839 |
| exon | 1009721 | 1009806 |
| exon | 1009884 | 1009943 |
| exon | 1010051 | 1010107 |
| exon | 1010985 | 1011132 |
| exon | 1011295 | 1012135 |
| CDS | 1007740 | 1007839 |
| CDS | 1009721 | 1009806 |
| CDS | 1009884 | 1009943 |
| CDS | 1010051 | 1010107 |
| CDS | 1010985 | 1011132 |
| CDS | 1011295 | 1011299 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | blocked early in transport 1 | ko04130 | K08504 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.