PH01000145G0500's details annotation
1.Annotation
ICBR annotation: Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
Blast result AT1G16720 : 6.00E-33
Blast annotation: high chlorophyll fluorescence phenotype 173
2.Location
Scaffold: PH01000145
Strand: -
| Region | Start | End |
| gene | 341914 | 344860 |
| mRNA | 341914 | 344860 |
| exon | 341914 | 342425 |
| exon | 342549 | 342596 |
| exon | 342866 | 342922 |
| exon | 343280 | 343345 |
| exon | 344084 | 344860 |
| CDS | 342354 | 342425 |
| CDS | 342549 | 342596 |
| CDS | 342866 | 342922 |
| CDS | 343280 | 343345 |
| CDS | 344084 | 344206 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001651 | clathrin adaptor complex, COPI vesicle coat, retrograde vesicle-mediated transport, Golgi to ER, inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity, Ether_lipid_metabolism proton transport, Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.