PH01000150G1310's details annotation
1.Annotation
ICBR annotation: SWIB/MDM2 domain containing protein, expressed
Blast result AT4G22360 : 8.70E-71
Blast annotation: SWIB complex BAF60b domain-containing protein
2.Location
Scaffold: PH01000150
Strand: -
| Region | Start | End |
| gene | 907915 | 913590 |
| mRNA | 907915 | 913590 |
| exon | 907915 | 908967 |
| exon | 910220 | 910416 |
| exon | 910500 | 910671 |
| exon | 910762 | 910873 |
| exon | 911345 | 911421 |
| exon | 911852 | 913590 |
| CDS | 908836 | 908967 |
| CDS | 910220 | 910416 |
| CDS | 910500 | 910671 |
| CDS | 910762 | 910873 |
| CDS | 911345 | 911421 |
| CDS | 911852 | 912307 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SWI/SNF-BAF60b |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02201.17 | SWIB | 196 | 266 |
| PF02201.17 | SWIB | 304 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.