Annotation of co-expression genes

PH01000158G0320's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT1G17370 : 4.00E-154
Blast annotation: oligouridylate binding protein 1B

2.Location

Scaffold: PH01000158
Strand: +

RegionStartEnd
gene200914206985
mRNA200914206985
exon200914201563
exon201757201760
exon202087202178
exon203258203319
exon203818203920
exon204073204149
exon204203204315
exon204405204492
exon204751204826
exon204921204951
exon205155205274
exon205773205858
exon206103206276
exon206415206985
CDS201444201563
CDS201757201760
CDS202087202178
CDS203258203319
CDS203818203920
CDS204073204149
CDS204203204315
CDS204405204492
CDS204751204826
CDS204921204951
CDS205155205274
CDS205773205858
CDS206103206276
CDS206415206702

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000237solute:hydrogen antiporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_161127
PF00076.21RRM_1146216
PF00076.21RRM_1267333

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.