Annotation of co-expression genes

PH01000159G0760's details annotation

1.Annotation

ICBR annotation: RNA cap guanine-N2 methyltransferase domain containing protein, expressed

Blast result AT1G45231 : 2.30E-90
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.Location

Scaffold: PH01000159
Strand: -

RegionStartEnd
gene609235617091
mRNA609235617091
exon609235609968
exon610107610230
exon610307610401
exon610637610772
exon611301611532
exon612566612656
exon612767612881
exon612963613062
exon613394614357
exon614430614512
exon614710614761
exon615888615957
exon616044617091
CDS609831609968
CDS610107610230
CDS610307610401
CDS610637610772
CDS611301611532
CDS612566612656
CDS612767612881
CDS612963613062
CDS613394614357
CDS614430614512
CDS614710614761
CDS615888615957
CDS616044616117

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00397.25WW303331
PF09445.9Methyltransf_15576731

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transporttrimethylguanosine synthase [EC:2.1.1.-]ko03013K14292

10.Gene Ontology

GO AccessionGO Annotation
GO:0001510RNA methylation
GO:0005515protein binding
GO:0008168methyltransferase activity
GO:00094527-methylguanosine RNA capping

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.