Annotation of co-expression genes

PH01000164G0050's details annotation

1.Annotation

ICBR annotation: integral membrane protein, putative, expressed

Blast result AT5G45370 : 5.00E-102
Blast annotation: nodulin MtN21 /EamA-like transporter family protein

2.Location

Scaffold: PH01000164
Strand: +

RegionStartEnd
gene3539538727
mRNA3539538727
exon3539535793
exon3621136327
exon3642536716
exon3693437089
exon3717337324
exon3761838727
CDS3555235793
CDS3621136327
CDS3642536716
CDS3693437089
CDS3717337324
CDS3761837783

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00892.19EamA198335

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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