PH01000165G0770's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT5G14530 : 2.00E-145
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000165
Strand: -
| Region | Start | End |
| gene | 479411 | 482879 |
| mRNA | 479411 | 482879 |
| exon | 479411 | 480068 |
| exon | 480140 | 480189 |
| exon | 480706 | 480787 |
| exon | 480927 | 481064 |
| exon | 481147 | 481263 |
| exon | 481400 | 481499 |
| exon | 481592 | 481765 |
| exon | 482458 | 482558 |
| exon | 482653 | 482879 |
| CDS | 479943 | 480068 |
| CDS | 480140 | 480189 |
| CDS | 480706 | 480787 |
| CDS | 480927 | 481064 |
| CDS | 481147 | 481263 |
| CDS | 481400 | 481499 |
| CDS | 481592 | 481765 |
| CDS | 482458 | 482558 |
| CDS | 482653 | 482727 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 28 | 54 |
| PF00400.31 | WD40 | 106 | 143 |
| PF00400.31 | WD40 | 247 | 273 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | COMPASS component SWD2 | ko03015 | K14962 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.