PH01000166G0740's details annotation
1.Annotation
ICBR annotation: ZOS1-09 - C2H2 zinc finger protein, expressed
Blast result AT4G15420 : 0.00E+00
Blast annotation: Ubiquitin fusion degradation UFD1 family protein
2.Location
Scaffold: PH01000166
Strand: -
| Region | Start | End |
| gene | 572835 | 577708 |
| mRNA | 572835 | 577708 |
| exon | 572835 | 574654 |
| exon | 575024 | 576322 |
| exon | 576944 | 577708 |
| CDS | 574427 | 574654 |
| CDS | 575024 | 576322 |
| CDS | 576944 | 577126 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03152.13 | UFD1 | 91 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.