PH01000182G0140's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase subunit E, putative, expressed
Blast result AT4G11150 : 2.10E-93
Blast annotation: vacuolar ATP synthase subunit E1
2.Location
Scaffold: PH01000182
Strand: -
| Region | Start | End |
| gene | 100121 | 106184 |
| mRNA | 100121 | 106184 |
| exon | 100121 | 100361 |
| exon | 100815 | 100914 |
| exon | 101422 | 101618 |
| exon | 102421 | 102577 |
| exon | 103714 | 103814 |
| exon | 105193 | 106184 |
| CDS | 100326 | 100361 |
| CDS | 100815 | 100914 |
| CDS | 101422 | 101618 |
| CDS | 102421 | 102577 |
| CDS | 103714 | 103814 |
| CDS | 105193 | 105294 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01991.17 | vATP-synt_E | 16 | 225 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit E [EC:3.6.3.14] | ko00190 | K02150 |
| Phagosome | V-type H+-transporting ATPase subunit E [EC:3.6.3.14] | ko04145 | K02150 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.