PH01000219G1160's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT4G29120 : 1.20E-40
Blast annotation: 6-phosphogluconate dehydrogenase family protein
2.Location
Scaffold: PH01000219
Strand: +
| Region | Start | End |
| gene | 770463 | 773348 |
| mRNA | 770463 | 773348 |
| exon | 770463 | 771772 |
| exon | 771807 | 773348 |
| CDS | 771040 | 771772 |
| CDS | 771807 | 772099 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03446.14 | NAD_binding_2 | 94 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity |
| GO:0006098 | pentose-phosphate shunt |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.