PH01000236G1020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G17550 : 2.80E-55
Blast annotation: -
2.Location
Scaffold: PH01000236
Strand: -
| Region | Start | End |
| gene | 702767 | 709164 |
| mRNA | 702767 | 709164 |
| exon | 702767 | 703578 |
| exon | 703642 | 703813 |
| exon | 703905 | 705590 |
| exon | 706661 | 706716 |
| exon | 707208 | 707214 |
| exon | 707281 | 707360 |
| exon | 707599 | 707659 |
| exon | 708594 | 709164 |
| CDS | 702923 | 703578 |
| CDS | 703642 | 703813 |
| CDS | 703905 | 705590 |
| CDS | 706661 | 706716 |
| CDS | 707208 | 707214 |
| CDS | 707281 | 707360 |
| CDS | 707599 | 707659 |
| CDS | 708594 | 708713 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000085 | mitochondrial inner membrane, HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001196 | nitronate monooxygenase activity, intramolecular transferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14309.5 | DUF4378 | 776 | 934 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.