PH01000236G1140's details annotation
1.Annotation
ICBR annotation: DNA-binding bromodomain-containing protein, putative, expressed
Blast result AT1G20670 : 4.60E-34
Blast annotation: DNA-binding bromodomain-containing protein
2.Location
Scaffold: PH01000236
Strand: +
| Region | Start | End |
| gene | 766549 | 776097 |
| mRNA | 766549 | 776097 |
| exon | 766549 | 767499 |
| exon | 767966 | 768198 |
| exon | 768318 | 768363 |
| exon | 768462 | 768560 |
| exon | 769880 | 769948 |
| exon | 771144 | 771467 |
| exon | 772161 | 772491 |
| exon | 772582 | 772715 |
| exon | 772937 | 773746 |
| exon | 775882 | 776097 |
| CDS | 767110 | 767499 |
| CDS | 767966 | 768198 |
| CDS | 768318 | 768363 |
| CDS | 768462 | 768560 |
| CDS | 769880 | 769948 |
| CDS | 771144 | 771467 |
| CDS | 772161 | 772491 |
| CDS | 772582 | 772715 |
| CDS | 772937 | 773746 |
| CDS | 775882 | 776064 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 202 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.