PH01000243G0740's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G17550 : 4.90E-59
Blast annotation: -
2.Location
Scaffold: PH01000243
Strand: +
| Region | Start | End |
| gene | 411725 | 417411 |
| mRNA | 411725 | 417411 |
| exon | 411725 | 412385 |
| exon | 413268 | 413345 |
| exon | 413663 | 413742 |
| exon | 413808 | 413814 |
| exon | 414307 | 415992 |
| exon | 416355 | 416529 |
| exon | 416612 | 417411 |
| CDS | 412326 | 412385 |
| CDS | 413268 | 413345 |
| CDS | 413663 | 413742 |
| CDS | 413808 | 413814 |
| CDS | 414307 | 415992 |
| CDS | 416355 | 416529 |
| CDS | 416612 | 417243 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000085 | mitochondrial inner membrane, HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14309.5 | DUF4378 | 736 | 894 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.