PH01000247G0900's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT4G34830 : 8.00E-165
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000247
Strand: +
| Region | Start | End |
| gene | 660450 | 666919 |
| mRNA | 660450 | 666919 |
| exon | 660450 | 660589 |
| exon | 660716 | 660839 |
| exon | 661409 | 661571 |
| exon | 661647 | 661779 |
| exon | 662162 | 662437 |
| exon | 662576 | 662639 |
| exon | 662727 | 662871 |
| exon | 662968 | 663083 |
| exon | 663182 | 663310 |
| exon | 663452 | 663643 |
| exon | 663738 | 663902 |
| exon | 663997 | 664137 |
| exon | 664336 | 664435 |
| exon | 666207 | 666315 |
| exon | 666393 | 666484 |
| exon | 666659 | 666919 |
| CDS | 660525 | 660589 |
| CDS | 660716 | 660839 |
| CDS | 661409 | 661571 |
| CDS | 661647 | 661779 |
| CDS | 662162 | 662437 |
| CDS | 662576 | 662639 |
| CDS | 662727 | 662871 |
| CDS | 662968 | 663083 |
| CDS | 663182 | 663310 |
| CDS | 663452 | 663643 |
| CDS | 663738 | 663902 |
| CDS | 663997 | 664137 |
| CDS | 664336 | 664435 |
| CDS | 666207 | 666315 |
| CDS | 666393 | 666484 |
| CDS | 666659 | 666810 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000484 | RLK-Pelle_LRR-Xa (from iTAK) sigma factor activity, heat shock protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 307 | 337 |
| PF01535.19 | PPR | 344 | 372 |
| PF17177.3 | PPR_long | 383 | 553 |
| PF01535.19 | PPR | 561 | 587 |
| PF13041.5 | PPR_2 | 594 | 639 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.