Annotation of co-expression genes

PH01000268G0540's details annotation

1.Annotation

ICBR annotation: chromosome condensation protein like, putative, expressed

Blast result AT5G37630 : 0.00E+00
Blast annotation: ARM repeat superfamily protein

2.Location

Scaffold: PH01000268
Strand: -

RegionStartEnd
gene421946431575
mRNA421946431575
exon421946422366
exon422472422733
exon424122424394
exon424674425147
exon425195425227
exon425299425738
exon425826425973
exon426862426950
exon427282427547
exon427655427800
exon427895428098
exon428545429187
exon429529431575
CDS422017422366
CDS422472422733
CDS424122424394
CDS424674425147
CDS425195425227
CDS425299425738
CDS425826425973
CDS426862426950
CDS427282427547
CDS427655427800
CDS427895428098
CDS428545429187
CDS429529429764

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12719.6Cnd3688879

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000796condensin complex
GO:0005488binding
GO:0007076mitotic chromosome condensation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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