PH01000270G0410's details annotation
1.Annotation
ICBR annotation: polypyrimidine tract-binding protein, putative, expressed
Blast result AT5G53180 : 1.20E-43
Blast annotation: polypyrimidine tract-binding protein 2
2.Location
Scaffold: PH01000270
Strand: +
| Region | Start | End |
| gene | 303607 | 307846 |
| mRNA | 303607 | 307846 |
| exon | 303607 | 304560 |
| exon | 304921 | 304978 |
| exon | 305040 | 305147 |
| exon | 305271 | 305307 |
| exon | 305407 | 305519 |
| exon | 305691 | 306279 |
| exon | 306654 | 306718 |
| exon | 306868 | 306927 |
| exon | 307607 | 307846 |
| CDS | 304211 | 304560 |
| CDS | 304921 | 304978 |
| CDS | 305040 | 305147 |
| CDS | 305271 | 305307 |
| CDS | 305407 | 305519 |
| CDS | 305691 | 306279 |
| CDS | 306654 | 306718 |
| CDS | 306868 | 306927 |
| CDS | 307607 | 307696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.