PH01000270G0790's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT5G53140 : 2.40E-81
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01000270
Strand: -
| Region | Start | End |
| gene | 517672 | 522725 |
| mRNA | 517672 | 522725 |
| exon | 517672 | 518294 |
| exon | 519343 | 519417 |
| exon | 519556 | 519647 |
| exon | 519809 | 519895 |
| exon | 520429 | 520522 |
| exon | 521093 | 521277 |
| exon | 521349 | 522725 |
| CDS | 518127 | 518294 |
| CDS | 519343 | 519417 |
| CDS | 519556 | 519647 |
| CDS | 519809 | 519895 |
| CDS | 520429 | 520522 |
| CDS | 521093 | 521277 |
| CDS | 521349 | 521421 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 12 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.