PH01000271G0310's details annotation
1.Annotation
ICBR annotation: myosin head family protein, expressed
Blast result AT5G20490 : 2.60E-97
Blast annotation: Myosin family protein with Dil domain
2.Location
Scaffold: PH01000271
Strand: -
| Region | Start | End |
| gene | 258852 | 264637 |
| mRNA | 258852 | 264637 |
| exon | 258852 | 259094 |
| exon | 259192 | 259274 |
| exon | 259396 | 259476 |
| exon | 259561 | 259617 |
| exon | 259729 | 259808 |
| exon | 259943 | 259956 |
| exon | 260034 | 260104 |
| exon | 260417 | 260761 |
| exon | 260939 | 261118 |
| exon | 261198 | 261278 |
| exon | 261374 | 261480 |
| exon | 261666 | 261742 |
| exon | 261787 | 261950 |
| exon | 262106 | 262277 |
| exon | 263061 | 263225 |
| exon | 263356 | 263523 |
| exon | 263717 | 263884 |
| exon | 263979 | 264146 |
| exon | 264319 | 264637 |
| CDS | 258968 | 259094 |
| CDS | 259192 | 259274 |
| CDS | 259396 | 259476 |
| CDS | 259561 | 259617 |
| CDS | 259729 | 259808 |
| CDS | 259943 | 259956 |
| CDS | 260034 | 260104 |
| CDS | 260417 | 260761 |
| CDS | 260939 | 261118 |
| CDS | 261198 | 261278 |
| CDS | 261374 | 261480 |
| CDS | 261666 | 261742 |
| CDS | 261787 | 261950 |
| CDS | 262106 | 262277 |
| CDS | 263061 | 263225 |
| CDS | 263356 | 263523 |
| CDS | 263717 | 263884 |
| CDS | 263979 | 264146 |
| CDS | 264319 | 264377 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01843.18 | DIL | 656 | 709 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.