PH01000280G1000's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat containing protein, putative, expressed
Blast result AT3G04830 : 8.00E-118
Blast annotation: Protein prenylyltransferase superfamily protein
2.Location
Scaffold: PH01000280
Strand: -
| Region | Start | End |
| gene | 624261 | 629936 |
| mRNA | 624261 | 629936 |
| exon | 624261 | 624662 |
| exon | 624759 | 624872 |
| exon | 626652 | 626733 |
| exon | 626816 | 626875 |
| exon | 626968 | 627053 |
| exon | 627286 | 627380 |
| exon | 627858 | 627906 |
| exon | 628031 | 628095 |
| exon | 628411 | 629936 |
| CDS | 624498 | 624662 |
| CDS | 624759 | 624872 |
| CDS | 626652 | 626733 |
| CDS | 626816 | 626875 |
| CDS | 626968 | 627053 |
| CDS | 627286 | 627380 |
| CDS | 627858 | 627906 |
| CDS | 628031 | 628095 |
| CDS | 628411 | 628621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001272 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.