Gene details

Annotation of co-expression genes

PH01000299G0460's details annotation

1.Annotation

ICBR annotation: L1P family of ribosomal proteins domain containing protein, expressed

Blast result AT1G08360 : 1.60E-88
Blast annotation: Ribosomal protein L1p/L10e family

2.Location

Scaffold: PH01000299
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000593	nicotinate nucleotide salvage, diphosphomevalonate decarboxylase activity, nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, NAD biosynthetic process, Nicotinate_and_nicotinamide_metabolism isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis large ribosomal subunit,
coexpression network	CFinderM001823	large ribosomal subunit,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00687.20	Ribosomal_L1	23	211

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein L10Ae	ko03011	K02865

10.Gene Ontology

GO Accession	GO Annotation
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0006412	translation
GO:0015934	large ribosomal subunit

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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