Annotation of co-expression genes

PH01000300G0810's details annotation

1.Annotation

ICBR annotation: tyrosine protein kinase domain containing protein, putative, expressed

Blast result AT1G16670 : 2.00E-123
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000300
Strand: -

RegionStartEnd
gene512356519871
mRNA512356519871
exon512356513970
exon514120514270
exon514356514593
exon514684514894
exon514986515092
exon515195515302
exon516182516260
exon517638517748
exon518948519009
exon519436519871
CDS513614513970
CDS514120514270
CDS514356514593
CDS514684514894
CDS514986515092
CDS515195515302
CDS516182516260
CDS517638517748
CDS518948519009
CDS519436519496

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr164359

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.