PH01000325G1040's details annotation
1.Annotation
ICBR annotation: pre-mRNA-splicing factor, putative, expressed
Blast result AT1G03140 : 1.50E-54
Blast annotation: splicing factor Prp18 family protein
2.Location
Scaffold: PH01000325
Strand: -
| Region | Start | End |
| gene | 715459 | 718154 |
| mRNA | 715459 | 718154 |
| exon | 715459 | 718154 |
| CDS | 715643 | 716563 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08799.10 | PRP4 | 114 | 140 |
| PF02840.14 | Prp18 | 244 | 294 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005681 | spliceosomal complex |
| GO:0008380 | RNA splicing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.