PH01000335G0890's details annotation
1.Annotation
ICBR annotation: ubiquitin family protein, putative, expressed
Blast result AT5G03240 : 2.80E-40
Blast annotation: polyubiquitin 3
2.Location
Scaffold: PH01000335
Strand: -
| Region | Start | End |
| gene | 632992 | 635777 |
| mRNA | 632992 | 635777 |
| exon | 632992 | 634480 |
| exon | 635531 | 635777 |
| CDS | 633566 | 634480 |
| CDS | 635531 | 635569 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 14 | 80 |
| PF00240.22 | ubiquitin | 92 | 153 |
| PF00240.22 | ubiquitin | 161 | 233 |
| PF00240.22 | ubiquitin | 237 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.