Annotation of co-expression genes

PH01000345G0300's details annotation

1.Annotation

ICBR annotation: WAX2, putative, expressed

Blast result AT1G02205 : 0
Blast annotation: Fatty acid hydroxylase superfamily

2.Location

Scaffold: PH01000345
Strand: +

RegionStartEnd
gene257093264964
mRNA257093264964
exon257093257252
exon257973258196
exon258416258648
exon259024259114
exon260639260666
exon261280261349
exon261716261935
exon262069262348
exon262523262630
exon263058263258
exon263363263461
exon263951264121
exon264225264964
CDS257193257252
CDS257973258196
CDS258416258648
CDS259024259114
CDS260639260666
CDS261280261349
CDS261716261935
CDS262069262348
CDS262523262630
CDS263058263258
CDS263363263461
CDS263951264121
CDS264225264386

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04116.12FA_hydroxylase241335
PF12076.7Wax2_C482644

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0006633fatty acid biosynthetic process
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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