PH01000365G0690's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT2G31870 : 1.80E-96
Blast annotation: Poly (ADP-ribose) glycohydrolase (PARG)
2.Location
Scaffold: PH01000365
Strand: -
| Region | Start | End |
| gene | 435498 | 440956 |
| mRNA | 435498 | 440956 |
| exon | 435498 | 436284 |
| exon | 436734 | 436796 |
| exon | 436958 | 437095 |
| exon | 437458 | 437506 |
| exon | 437669 | 437812 |
| exon | 437977 | 438095 |
| exon | 438557 | 438661 |
| exon | 439847 | 440051 |
| exon | 440405 | 440956 |
| CDS | 436120 | 436284 |
| CDS | 436734 | 436796 |
| CDS | 436958 | 437095 |
| CDS | 437458 | 437506 |
| CDS | 437669 | 437812 |
| CDS | 437977 | 438095 |
| CDS | 438557 | 438661 |
| CDS | 439847 | 440051 |
| CDS | 440405 | 440664 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05028.13 | PARG_cat | 92 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004649 | poly(ADP-ribose) glycohydrolase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.