PH01000371G0690's details annotation
1.Annotation
ICBR annotation: GTPase-activating protein, putative, expressed
Blast result AT5G46750 : 3.00E-129
Blast annotation: ARF-GAP domain 9
2.Location
Scaffold: PH01000371
Strand: -
| Region | Start | End |
| gene | 449559 | 452345 |
| mRNA | 449559 | 452345 |
| exon | 449559 | 450104 |
| exon | 450321 | 450581 |
| exon | 450755 | 451214 |
| exon | 451888 | 452006 |
| exon | 452160 | 452345 |
| CDS | 450063 | 450104 |
| CDS | 450321 | 450581 |
| CDS | 450755 | 451214 |
| CDS | 451888 | 452006 |
| CDS | 452160 | 452228 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01412.17 | ArfGap | 12 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | ADP-ribosylation factor GTPase-activating protein 2/3 | ko04144 | K12493 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008060 | ARF GTPase activator activity |
| GO:0008270 | zinc ion binding |
| GO:0032312 | regulation of ARF GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.