Annotation of co-expression genes

PH01000387G0070's details annotation

1.Annotation

ICBR annotation: ankyrin repeat-rich protein, putative, expressed

Blast result AT5G57740 : 2.00E-108
Blast annotation: XB3 ortholog 2 in Arabidopsis thaliana

2.Location

Scaffold: PH01000387
Strand: +

RegionStartEnd
gene103222106968
mRNA103222106968
exon103222103570
exon103704103763
exon104636104707
exon104795104970
exon105053105213
exon105366105424
exon105501105547
exon106050106190
exon106526106968
CDS103376103570
CDS103704103763
CDS104636104707
CDS104795104970
CDS105053105213
CDS105366105424
CDS105501105547
CDS106050106190
CDS106526106694

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_22181
PF12796.6Ank_288208
PF12796.6Ank_2223275

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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