PH01000387G0590's details annotation
1.Annotation
ICBR annotation: acetyltransferase type B catalytic subunit, putative, expressed
Blast result AT5G56740 : 3.60E-46
Blast annotation: histone acetyltransferase of the GNAT family 2
2.Location
Scaffold: PH01000387
Strand: +
| Region | Start | End |
| gene | 534526 | 539176 |
| mRNA | 534526 | 539176 |
| exon | 534526 | 535574 |
| exon | 536149 | 536287 |
| exon | 537356 | 537434 |
| exon | 537894 | 539176 |
| CDS | 535460 | 535574 |
| CDS | 536149 | 536287 |
| CDS | 537356 | 537434 |
| CDS | 537894 | 538553 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000123 | histone acetyltransferase complex |
| GO:0004402 | histone acetyltransferase activity |
| GO:0005634 | nucleus |
| GO:0006348 | chromatin silencing at telomere |
| GO:0016573 | histone acetylation |
| GO:0042393 | histone binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.