Annotation of co-expression genes

PH01000410G0830's details annotation

1.Annotation

ICBR annotation: CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed

Blast result AT4G26100 : 1.50E-95
Blast annotation: casein kinase 1

2.Location

Scaffold: PH01000410
Strand: -

RegionStartEnd
gene538693544666
mRNA538693544666
exon538693540213
exon540337540479
exon540971541031
exon541127541209
exon541939542000
exon542278542348
exon542432542527
exon542679542827
exon542926542995
exon543413543499
exon543555543595
exon543707544666
CDS539920540213
CDS540337540479
CDS540971541031
CDS541127541209
CDS541939542000
CDS542278542348
CDS542432542527
CDS542679542827
CDS542926542995
CDS543413543499
CDS543555543595
CDS543707543782

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase65210

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.