PH01000415G0040's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT4G00660 : 4.00E-178
Blast annotation: RNAhelicase-like 8
2.Location
Scaffold: PH01000415
Strand: -
| Region | Start | End |
| gene | 14897 | 22481 |
| mRNA | 14897 | 22481 |
| exon | 14897 | 15088 |
| exon | 15888 | 16064 |
| exon | 16738 | 16918 |
| exon | 17020 | 17271 |
| exon | 19353 | 19591 |
| exon | 19839 | 20073 |
| exon | 20758 | 20818 |
| exon | 21277 | 22481 |
| CDS | 14988 | 15088 |
| CDS | 15888 | 16064 |
| CDS | 16738 | 16918 |
| CDS | 17020 | 17271 |
| CDS | 19353 | 19591 |
| CDS | 19839 | 20073 |
| CDS | 20758 | 20818 |
| CDS | 21277 | 21605 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 163 | 327 |
| PF00271.30 | Helicase_C | 364 | 433 |
| PF00271.30 | Helicase_C | 435 | 522 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.