Annotation of co-expression genes

PH01000416G0840's details annotation

1.Annotation

ICBR annotation: sucrose synthase, putative, expressed

Blast result AT4G02280 : 0.00E+00
Blast annotation: sucrose synthase 3

2.Location

Scaffold: PH01000416
Strand: -

RegionStartEnd
gene502532508542
mRNA502532508542
exon502532502654
exon502861502999
exon503090503334
exon503432503753
exon504034504258
exon504533504699
exon504780504896
exon505278505451
exon505671505766
exon505908506124
exon506539506657
exon506747506939
exon507456507607
exon507698507824
exon507920508542
CDS502616502654
CDS502861502999
CDS503090503334
CDS503432503753
CDS504034504258
CDS504533504699
CDS504780504896
CDS505278505451
CDS505671505766
CDS505908506124
CDS506539506657
CDS506747506939
CDS507456507607
CDS507698507824
CDS507920508017

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT4

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00862.18Sucrose_synth8553
PF00534.19Glycos_transf_1565737

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismsucrose synthase [EC:2.4.1.13]ko00500K00695

10.Gene Ontology

GO AccessionGO Annotation
GO:0005985sucrose metabolic process
GO:0009058biosynthetic process
GO:0016157sucrose synthase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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