PH01000421G0170's details annotation
1.Annotation
ICBR annotation: ranBP1 domain containing protein, expressed
Blast result AT1G52380 : 3.90E-69
Blast annotation: NUP50 (Nucleoporin 50 kDa) protein
2.Location
Scaffold: PH01000421
Strand: +
| Region | Start | End |
| gene | 110111 | 112440 |
| mRNA | 110111 | 112440 |
| exon | 110111 | 110201 |
| exon | 110820 | 112440 |
| CDS | 110193 | 110201 |
| CDS | 110820 | 112268 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08911.10 | NUP50 | 21 | 80 |
| PF00638.17 | Ran_BP1 | 349 | 463 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005643 | nuclear pore |
| GO:0046907 | intracellular transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.