Gene details

Annotation of co-expression genes

PH01000423G1010's details annotation

1.Annotation

ICBR annotation: transcription initiation factor IIF beta subunit, putative, expressed

Blast result AT1G75510 : 7.80E-87
Blast annotation: Transcription initiation factor IIF, beta subunit

2.Location

Scaffold: PH01000423
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001470	Phenylalanine,_tyrosine_and_tryptophan_biosynthesis transcription factor TFIIF complex, transcription from RNA polymerase II promoter, transcription initiation from RNA polymerase II promoter, L-phenylalanine biosynthetic process, Basal_transcription_factors prephenate dehydratase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF02270.14	TFIIF_beta	100	250

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Basal transcription factors	transcription initiation factor TFIIF beta subunit	ko03022	K03139

10.Gene Ontology

GO Accession	GO Annotation
GO:0003824	catalytic activity
GO:0005524	ATP binding
GO:0005634	nucleus
GO:0005674	transcription factor TFIIF complex
GO:0006366	transcription from RNA polymerase II promoter
GO:0006367	transcription initiation from RNA polymerase II promoter
GO:0008026	ATP-dependent helicase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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