PH01000426G0840's details annotation
1.Annotation
ICBR annotation: pinin/SDK/memA protein, putative, expressed
Blast result AT1G15200 : 2.00E-75
Blast annotation: protein-protein interaction regulator family protein
2.Location
Scaffold: PH01000426
Strand: -
| Region | Start | End |
| gene | 513385 | 520172 |
| mRNA | 513385 | 520172 |
| exon | 513385 | 514452 |
| exon | 515501 | 515585 |
| exon | 515904 | 516004 |
| exon | 516125 | 516208 |
| exon | 517070 | 517141 |
| exon | 518841 | 518909 |
| exon | 518995 | 519111 |
| exon | 519217 | 519369 |
| exon | 519483 | 519542 |
| exon | 519581 | 520172 |
| CDS | 514078 | 514452 |
| CDS | 515501 | 515585 |
| CDS | 515904 | 516004 |
| CDS | 516125 | 516208 |
| CDS | 517070 | 517141 |
| CDS | 518841 | 518909 |
| CDS | 518995 | 519111 |
| CDS | 519217 | 519369 |
| CDS | 519483 | 519542 |
| CDS | 519581 | 519862 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001268 | protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04696.12 | Pinin_SDK_memA | 226 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | pinin | ko03013 | K13114 |
| mRNA surveillance pathway | pinin | ko03015 | K13114 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.