Annotation of co-expression genes

PH01000430G0310's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT2G27060 : 0.00E+00
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000430
Strand: +

RegionStartEnd
gene175701184524
mRNA175701184524
exon175701176352
exon176505176570
exon178303178548
exon178758179099
exon180315180498
exon180725181652
exon181990183606
exon183694184524
CDS176291176352
CDS176505176570
CDS178303178548
CDS178758179099
CDS180315180498
CDS180725181652
CDS181990183606
CDS183694184283

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_8400457
PF00560.32LRR_1619641
PF07714.16Pkinase_Tyr10651265

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0010181FMN binding
GO:0016491oxidoreductase activity
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.