Annotation of co-expression genes

PH01000432G0330's details annotation

1.Annotation

ICBR annotation: glyceraldehyde-3-phosphate dehydrogenase, putative, expressed

Blast result AT1G13440 : 1.00E-162
Blast annotation: glyceraldehyde-3-phosphate dehydrogenase C2

2.Location

Scaffold: PH01000432
Strand: -

RegionStartEnd
gene235339239603
mRNA235339239603
exon235339235455
exon235921236010
exon236153236236
exon236481236623
exon237216237313
exon237401237461
exon237577237723
exon237829237928
exon238008238123
exon238723238823
exon238897238920
exon239024239603
CDS235410235455
CDS235921236010
CDS236153236236
CDS236481236623
CDS237216237313
CDS237401237461
CDS237577237723
CDS237829237928
CDS238008238123
CDS238723238823
CDS238897238920
CDS239024239027

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00044.23Gp_dh_N4107
PF02800.19Gp_dh_C159316

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesisglyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]ko00010K00134

10.Gene Ontology

GO AccessionGO Annotation
GO:0006006glucose metabolic process
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661NADP binding
GO:0051287NAD binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.