PH01000433G0010's details annotation
1.Annotation
ICBR annotation: MAC/Perforin domain containing protein, putative, expressed
Blast result AT1G29690 : 3.90E-89
Blast annotation: MAC/Perforin domain-containing protein
2.Location
Scaffold: PH01000433
Strand: -
| Region | Start | End |
| gene | 7100 | 17610 |
| mRNA | 7100 | 17610 |
| exon | 7100 | 8122 |
| exon | 11789 | 11817 |
| exon | 13723 | 13837 |
| exon | 14245 | 14271 |
| exon | 14314 | 14397 |
| exon | 14918 | 15081 |
| exon | 15477 | 15663 |
| exon | 16513 | 16708 |
| exon | 16785 | 17610 |
| CDS | 7490 | 8122 |
| CDS | 11789 | 11817 |
| CDS | 13723 | 13837 |
| CDS | 14245 | 14271 |
| CDS | 14314 | 14397 |
| CDS | 14918 | 15081 |
| CDS | 15477 | 15663 |
| CDS | 16513 | 16708 |
| CDS | 16785 | 17023 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01823.18 | MACPF | 19 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.