PH01000439G1010's details annotation
1.Annotation
ICBR annotation: hypersensitive-induced response protein, putative, expressed
Blast result AT5G51570 : 9.00E-122
Blast annotation: SPFH/Band 7/PHB domain-containing membrane-associated protein family
2.Location
Scaffold: PH01000439
Strand: -
| Region | Start | End |
| gene | 638453 | 643217 |
| mRNA | 638453 | 643217 |
| exon | 638453 | 639222 |
| exon | 639494 | 639590 |
| exon | 639848 | 639868 |
| exon | 640338 | 640429 |
| exon | 640508 | 640628 |
| exon | 641653 | 641805 |
| exon | 642724 | 643217 |
| CDS | 638861 | 639222 |
| CDS | 639494 | 639590 |
| CDS | 639848 | 639868 |
| CDS | 640338 | 640429 |
| CDS | 640508 | 640628 |
| CDS | 641653 | 641805 |
| CDS | 642724 | 642972 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01145.24 | Band_7 | 86 | 259 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.