PH01000456G0500's details annotation
1.Annotation
ICBR annotation: proline-rich family protein, putative, expressed
Blast result AT2G26770 : 3.20E-37
Blast annotation: plectin-related
2.Location
Scaffold: PH01000456
Strand: +
| Region | Start | End |
| gene | 339569 | 340864 |
| mRNA | 339569 | 340864 |
| exon | 339569 | 339982 |
| exon | 340201 | 340329 |
| exon | 340561 | 340653 |
| exon | 340851 | 340864 |
| CDS | 339695 | 339982 |
| CDS | 340201 | 340329 |
| CDS | 340561 | 340653 |
| CDS | 340851 | 340862 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16711.4 | SCAB-ABD | 56 | 98 |
| PF16712.4 | SCAB_CC | 102 | 170 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.