PH01000457G0610's details annotation
1.Annotation
ICBR annotation: cyclin-dependent kinase A-2, putative, expressed
Blast result AT3G48750 : 2.00E-144
Blast annotation: cell division control 2
2.Location
Scaffold: PH01000457
Strand: +
| Region | Start | End |
| gene | 398600 | 401664 |
| mRNA | 398600 | 401664 |
| exon | 398600 | 398866 |
| exon | 398987 | 399171 |
| exon | 399303 | 399420 |
| exon | 399599 | 399805 |
| exon | 400681 | 400844 |
| exon | 400958 | 401045 |
| exon | 401253 | 401306 |
| exon | 401623 | 401664 |
| CDS | 398858 | 398866 |
| CDS | 398987 | 399171 |
| CDS | 399303 | 399420 |
| CDS | 399599 | 399805 |
| CDS | 400681 | 400844 |
| CDS | 400958 | 401045 |
| CDS | 401253 | 401306 |
| CDS | 401623 | 401649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 4 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.