PH01000461G0230's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G27100 : 2.90E-17
Blast annotation: -
2.Location
Scaffold: PH01000461
Strand: +
| Region | Start | End |
| gene | 160970 | 166988 |
| mRNA | 160970 | 166988 |
| exon | 160970 | 161641 |
| exon | 162181 | 162256 |
| exon | 163886 | 164294 |
| exon | 164557 | 164644 |
| exon | 164936 | 165030 |
| exon | 166379 | 166988 |
| CDS | 161318 | 161641 |
| CDS | 162181 | 162256 |
| CDS | 163886 | 164294 |
| CDS | 164557 | 164644 |
| CDS | 164936 | 165030 |
| CDS | 166379 | 166610 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000085 | mitochondrial inner membrane, HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10163.8 | EnY2 | 294 | 334 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.