Annotation of co-expression genes

PH01000478G0330's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, putative, expressed

Blast result AT5G02370 : 8.00E-151
Blast annotation: ATP binding microtubule motor family protein

2.Location

Scaffold: PH01000478
Strand: +

RegionStartEnd
gene191792196302
mRNA191792196302
exon191792192533
exon192766192931
exon193022193222
exon193312193483
exon193567193772
exon193855194159
exon194241194326
exon194545194774
exon194858194904
exon195025195046
exon195130195198
exon195293195331
exon195640195723
exon196002196302
CDS192364192533
CDS192766192931
CDS193022193222
CDS193312193483
CDS193567193772
CDS193855194159
CDS194241194326
CDS194545194774
CDS194858194904
CDS195025195046
CDS195130195198
CDS195293195331
CDS195640195723
CDS196002196106

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin19326
PF12836.6HHH_3523565

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.