PH01000483G0380's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type, domain containing protein, expressed
Blast result AT5G60580 : 9.20E-99
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000483
Strand: -
| Region | Start | End |
| gene | 265758 | 268969 |
| mRNA | 265758 | 268969 |
| exon | 265758 | 266114 |
| exon | 266228 | 266300 |
| exon | 266580 | 266874 |
| exon | 266972 | 267146 |
| exon | 267308 | 267757 |
| exon | 268803 | 268969 |
| CDS | 266016 | 266114 |
| CDS | 266228 | 266300 |
| CDS | 266580 | 266874 |
| CDS | 266972 | 267146 |
| CDS | 267308 | 267757 |
| CDS | 268803 | 268847 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 239 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.