PH01000489G0060's details annotation
1.Annotation
ICBR annotation: ubiquitin family domain containing protein, expressed
Blast result AT4G26840 : 5.80E-42
Blast annotation: small ubiquitin-like modifier 1
2.Location
Scaffold: PH01000489
Strand: +
| Region | Start | End |
| gene | 42360 | 45161 |
| mRNA | 42360 | 45161 |
| exon | 42360 | 43142 |
| exon | 43743 | 43892 |
| exon | 44000 | 45161 |
| CDS | 42975 | 43142 |
| CDS | 43743 | 43892 |
| CDS | 44000 | 44071 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11976.7 | Rad60-SLD | 22 | 92 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | small ubiquitin-related modifier | ko03013 | K12160 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.