PH01000500G0770's details annotation
1.Annotation
ICBR annotation: surp module family protein, putative, expressed
Blast result AT5G55100 : 5.20E-71
Blast annotation: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
2.Location
Scaffold: PH01000500
Strand: -
| Region | Start | End |
| gene | 518446 | 524865 |
| mRNA | 518446 | 524865 |
| exon | 518446 | 520188 |
| exon | 521964 | 522749 |
| exon | 523166 | 523308 |
| exon | 524170 | 524224 |
| exon | 524375 | 524865 |
| CDS | 518779 | 520188 |
| CDS | 521964 | 522749 |
| CDS | 523166 | 523308 |
| CDS | 524170 | 524224 |
| CDS | 524375 | 524554 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01805.19 | Surp | 134 | 182 |
| PF01805.19 | Surp | 337 | 385 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.