Annotation of co-expression genes

PH01000503G0330's details annotation

1.Annotation

ICBR annotation: uncharacterized protein ycf45, putative, expressed

Blast result AT1G73170 : 5.00E-166
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01000503
Strand: -

RegionStartEnd
gene188863197769
mRNA188863197769
exon188863189679
exon189837189926
exon190013190189
exon190758190993
exon191112191274
exon192481192672
exon193140193290
exon193464193678
exon193800193901
exon194435194546
exon194664194878
exon194999195224
exon196453197769
CDS189380189679
CDS189837189926
CDS190013190189
CDS190758190993
CDS191112191274
CDS192481192672
CDS193140193290
CDS193464193678
CDS193800193901
CDS194435194546
CDS194664194878
CDS194999195224
CDS196453196784

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00996.17GDI254296
PF00004.28AAA386472

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.