PH01000507G0160's details annotation
1.Annotation
ICBR annotation: queuine tRNA-ribosyltransferase, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000507
Strand: -
| Region | Start | End |
| gene | 98931 | 106625 |
| mRNA | 98931 | 106625 |
| exon | 98931 | 99179 |
| exon | 99455 | 99482 |
| exon | 99569 | 99615 |
| exon | 99700 | 99801 |
| exon | 99889 | 99960 |
| exon | 100536 | 100646 |
| exon | 100782 | 100887 |
| exon | 101141 | 101182 |
| exon | 101283 | 101349 |
| exon | 101566 | 101686 |
| exon | 101808 | 101864 |
| exon | 103363 | 103419 |
| exon | 104223 | 104273 |
| exon | 104640 | 104818 |
| exon | 105328 | 105421 |
| exon | 106243 | 106625 |
| CDS | 99021 | 99179 |
| CDS | 99455 | 99482 |
| CDS | 99569 | 99615 |
| CDS | 99700 | 99801 |
| CDS | 99889 | 99960 |
| CDS | 100536 | 100646 |
| CDS | 100782 | 100887 |
| CDS | 101141 | 101182 |
| CDS | 101283 | 101349 |
| CDS | 101566 | 101686 |
| CDS | 101808 | 101864 |
| CDS | 103363 | 103419 |
| CDS | 104223 | 104273 |
| CDS | 104640 | 104818 |
| CDS | 105328 | 105421 |
| CDS | 106243 | 106260 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01702.17 | TGT | 147 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006400 | tRNA modification |
| GO:0008033 | tRNA processing |
| GO:0008479 | queuine tRNA-ribosyltransferase activity |
| GO:0008616 | queuosine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.