Annotation of co-expression genes

PH01000523G0240's details annotation

1.Annotation

ICBR annotation: pseudouridylate synthase, putative, expressed

Blast result AT3G04820 : 7.00E-152
Blast annotation: Pseudouridine synthase family protein

2.Location

Scaffold: PH01000523
Strand: +

RegionStartEnd
gene187283193625
mRNA187283193625
exon187283187519
exon187609187809
exon187893188131
exon188378188450
exon188564188620
exon189048189127
exon189563189650
exon189935190036
exon190171190310
exon190584190740
exon191071191138
exon191232191292
exon191652191689
exon192208192529
exon192756192837
exon193044193625
CDS187349187519
CDS187609187809
CDS187893188131
CDS188378188450
CDS188564188620
CDS189048189127
CDS189563189650
CDS189935190036
CDS190171190310
CDS190584190740
CDS191071191138
CDS191232191292
CDS191652191689
CDS192208192529
CDS192756192837
CDS193044193105

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01142.17TruD199272
PF01142.17TruD305364

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0001522pseudouridine synthesis
GO:0003723RNA binding
GO:0009451RNA modification
GO:0009982pseudouridine synthase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.